DevoWorm (2024, #25): Hypergraphs and Hypercells, GECCO Workshops, New Directions in Lineage Trees

Attendees: Mehul Arora, Susan Crawford-Young, Morgan Hough, Jesse Parent, and Bradly Alicea

Hypergraphs for many timepoints of C. elegans embryogenesis. methods for extracting hypergraphs and hyperedges for a cell tracking dataset. Preview of GECCO Workshops, including Graph GAs and connections to D-GNNs. Discussion of variation in single-cell observations. Paper on distance metrics for cell lineage trees and developmental noise in cell poisition.

References:
Natesan et.al (2023). Novel metrics reveal new structure and unappreciated heterogeneity in Caenorhabditis elegans development. PLoS Computational Biology, 19(12), e1011733.

Li et.al (2019). Deterministic Nature of Cellular Position Noise During C. elegans Embryogenesis. Cell Reports, 26(2), P313-P321.E7.

Graph-based Genetic Programming Workshop.

GECCO 2024

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